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PHMMTS - Home

This page provides an implementation of the pair hidden Markov models on tree structures PHMMTSs. Which is an extension of the. Pair hidden Markov models PHMMs. Defined on alignments of trees. PHMMTS provides a unifying framework and an automata-theoretic model for alignments of trees, structural alignments and pair stochastic context-free grammars. By structural alignment, we mean a pairwise alignment to align an unfolded RNA sequence into an RNA sequence of known secondary structure.
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Bioinformatics Tools and Databases for Functional RNA Analysis ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by The Functional RNA Pr

Bioinformatics Tools and Databases for Functional RNA Analysis. NcRNAorg is the portal site for bioinformatics tools and databases spcialized for functional RNAs. Results of various analysis on RNA secondary structures in one page! Accurate prediction of RNA secondary structure.

PSTAG - Home

PSTAG is a novel method for structural alignment to align and predict RNA secondary structures including pseudoknots. Revised Sep 21, 2004.

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PHMMTS - Home

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This page provides an implementation of the pair hidden Markov models on tree structures PHMMTSs. Which is an extension of the. Pair hidden Markov models PHMMs. Defined on alignments of trees. PHMMTS provides a unifying framework and an automata-theoretic model for alignments of trees, structural alignments and pair stochastic context-free grammars. By structural alignment, we mean a pairwise alignment to align an unfolded RNA sequence into an RNA sequence of known secondary structure.

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This website had the following in the web page, "This page provides an implementation of the pair hidden Markov models on tree structures PHMMTSs." Our analyzers analyzed that the web site stated " Which is an extension of the." The Website also stated " Pair hidden Markov models PHMMs. Defined on alignments of trees. PHMMTS provides a unifying framework and an automata-theoretic model for alignments of trees, structural alignments and pair stochastic context-free grammars. By structural alignment, we mean a pairwise alignment to align an unfolded RNA sequence into an RNA sequence of known secondary structure."

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